ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis.  Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional data.

CDash is an open source, web-based software testing server. CDash aggregates, analyzes and displays the results of software testing processes submitted from clients located around the world. Developers depend on CDash to convey the state of a software system, and to continually improve its quality.

Books

The ITK Software Guide 2.4: Purchase a copy
Jomier J., “Chapter 5: Spatial Objects” ITK Software Guide, Kitware Publications, 2003 pp.91-112

Publications

• Jomier J., Bailly A., Le Gall M., Avila R., An Open-Source Digital Archiving System for Medical and Scientific Research, Open Repositories 2010, Jul-2010
• Krishnan K., Ibanez L., Turner W., Jomier J., Avila R., An open-source toolkit for the volumetric measurement of CT lung lesions, Optics Express, Jul-2010
• Jomier J., Aylward S.R., Marion C., Lee J., Styner M., A digital archiving system and distributed server-side processing of large datasets, Proc. SPIE, Vol. 7264, 726413 (2009); DOI:10.1117/12.812227
• Jomier J., Ibanez L., Enquobahrie A., Pace D., Cleary K., An open-source framework for testing tracking devices using Lego Mindstorms, SPIE Medical Imaging, Feb-2009
• Cleary K., Enquobahrie A., Yaniv Z., Ibanez L., Aylward S., Zhang H., Gobbi D., Jomier J., Kim H., Cheng P., Blake B., Gary K., IGSTK: The Book, Signature Book Printing, Gaithersburg, Maryland, 2007
• Enquobahrie A., Cheng P., Gary K., Ibanez L., Gobbi D., Lindseth F., Yaniv Z., Aylward S., Jomier J., Cleary K., The Image-Guided Surgery Toolkit IGSTK: An Open Source C++ Software Toolkit, Springer-Verlag, 2007
• Peyre J, Smith J. K, Jomier, J, Castellano F, Hollingshead M, Aylward S, Castill M, “Systemic Lupus Erythematosus CNS Vasculitis: circulatory pathology demonstrated with perfusion MRI”, ASNR, April 2006, San Diego CA.
• Koenih M, Spindler W, Rexilius J, Jomier J, Link F, Peitgen HO, “Embedding VTK and ITK into a visual programming and rapid prototyping platform “, SPIE Medical Imaging, February 2006, San Diego CA
• Jomier J, LeDigarcher V, Aylward S, “Comparison of Vessel Segmentations Using STAPLE”, MICCAI 2005, October 2005, Palm Springs CA
• Jomier J, LeDigarcher V, Aylward S, “Automatic Vascular Tree Formation Using the Mahalanobis Distance”, MICCAI 2005, October 2005, Palm Springs CA
• Aylward S, Jomier J, Vivert C, LeDigarcher V, Bullit L, “Spatial Graphs for Intra-cranial Vascular Network Characterization, Generation, and Discrimination”, MICCAI 2005, October 2005, Palm Springs CA
• Blake, M.B., Cleary, K., Kim, H.S., Ranjan, S.R., Gary, K., Jomier, J, Aylward, S., and Ibanez, L., “Component-Based Design and Development for Robust Medical Applications”, High Confidence Medical Device Software and Systems (HCMDSS) Workshop, Philadelphia, PA, June 2005
• Rexilius J. , Jomier J., Spindler W., Link F.,Koenig M., and Peitgen H-O., “Combining a Visual Programming and Rapid Prototyping Platform with ITK” Workshop Bildverarbeitung für die Medizin (BVM), Springer Verlag,Heidelberg, Germany, pp. 460-464, 2005
• Jomier J, Aylward S, “Rigid and Deformable Vasculature-to-Image Registration: A Hierarchical Approach”, MICCAI 2004, September 2004, St Malo (France)
• Jomier J, Week S, Aylward S, “Vascular Image Registration for Intra-Operative 3D Ultrasound Annotation”, CARS 2004, June 2004, Chicago
• Jomier J, Rault E, Aylward S, “Automatic Quantification of Pupil Dilation Under Stress”, ISBI 2004, April 2004, Washington DC
• Jomier J, Wallace D, Aylward S, “Quantification of Retinopathy of Prematurity via Vessel Segmentation”, MICCAI 2003, November 2003 
• Dini C, Jomier J, Cool D, Aylward S, “Vascular Atlas Formation Using a Vessel-to-Image Affine Registration Method”, MICCAI 2003, November 2003
• Aylward S, Jomier J, Weeks S, Bullitt E, “Registration of Vascular Images,” Accepted, International Journal of Computer Vision, Submitted, March 2003, pages 15
• Aylward S, Jomier J, Guyon JP, Weeks S, “Intra-Operative 3D Ultrasound Augmentation.” IEEE International Symposium on Biomedical Imaging, July, 2002, Pages 4
• Wallace D, Jomier J, Aylward S, Landers M, “Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity”, 28th Annual Meeting of the American Association for Pediatric Ophthalmology and Strabismus, Seattle, Washington, March, 2002
• Wallace DK, Jomier J, Aylward S, Landers MB. Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity. Journal of the American Association for Pediatric Ophthalmology and Strabismus 2003;7:126-130.
• Wallace DK, Jomier J, Aylward S, Landers MB. Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity. The Retina Congress, San Francisco, California, September, 2002 

Workshops/Symposiums

• Jomier J,”Pre- to Post- Surgery Registration Using Vessels”, presented at the 18th Annual Radiology Research Symposium, University of North Carolina at Chapel Hill, April 2003
• Chillet D, Jomier J, Aylward S,”Vascular Atlas Formation via a vessel-to-image affine registration method”,18th Annual Radiology Research Symposium, UNC, April 2003
• Bland A, Jomier J, Aylward S,”Rigid Registration of 3D vessels with 2D Digital Image”,18th Annual Radiology Research Symposium, UNC, April 2003
• Aylward S, Weeks S, Fair J, Jomier J, Foskey M,”3D Living Donor Liver Transplant Planning”,18th Annual Radiology Research Symposium, UNC, April 2003
• Aylward S, Weeks S, Bullitt E, Jomier J, Guyon JP,”3D Ultrasound Annotation for Image-Guided Liver Lesion Radio-Frequency Ablation”,18th Annual Radiology Research Symposium, UNC,2003
• Jomier J,”A New Tool for Estimating Retinopathy of Prematurity”, presented at the 17th Annual Radiology Research Symposium, University of North Carolina at Chapel Hill, March 2002
• J. P. Guyon, J. Jomier, S. Aylward,”Augmenting intra-operative 3D Ultrasound using pre-operative CT and MR data”, 17th Annual Radiology Research Symposium, UNCl, March 2002
• S. Aylward, L. Ibanez, J. Kim, J. Jomier, J.P. Guyon,”The National Library of Medicine’s Insight Toolkit”,17th Annual Radiology Research Symposium, UNC, March 2002

CURRICULUM VITAE - Julien Jomier

CEO - Président Directeur Général
Kitware SAS
20 rue de la villette
69328 Lyon cedex 03
Phone: +33 (0)4.26.68.50.03
Home Page: http://julien.jomier.com

Education

2001-2003: University of North Carolina at Chapel Hill: Graduate Student in Computer Science. Master Degree. Courses: Image Processing, Computer Vision, Parallel, Distributed and Mobile Computing.
1998-2002: ESCPE (University of Chemistry, Physics and Electronics), Lyon, Fance. Engineering Degree in Electronics and Signal Processing.
1996-1998: ESCPE preparatory classes. Preparation for national competitive entrance exams to the French ‘Grandes Écoles’.

Work Experience

20010-Present: Kitware SAS: CEO.
2006-2010: Kitware Inc.: Technical Leader, R & D Engineer, Medical Imaging Division.
2004-2005: University of North Carolina at Chapel Hill: Computer Aided-Diagnosis and Display Laboratory: Faculty Research Lecturer
2001 - 2003: Computer Aided Diagnosis and Display Lab. (CADDLab): Research Assistant. Developer for a national standard for medical image processing: The Insight Toolkit (ITK) www.itk.org
2001 - 2004: E-business manager. Websites: felix-jazz.com and chef-argent.com
2000 - 2001: University of North Carolina at Chapel Hill: Computer Aided Diagnosis and Display Lab: Internship. Quantification of Retinopathy of Prematurity via Vessel Segmentation.
June 2000: Project leader. Conception and realization of a CCD camera from a TH7852 matrix and microcontroller 68HC11

Publications

· Jomier J, LeDigarcher V, Aylward S, Comparison of Vessel Segmentations Using STAPLE. MICCAI 2005 (Medical Image Computing and Computer-Assisted Intervention Conference), October 2005, Palm Springs.
· Jomier J, LeDigarcher V, Aylward S, Automatic Vascular Tree Formation Using the Mahalanobis Distance. MICCAI 2005 (Medical Image Computing and Computer-Assisted Intervention Conference), October 2005, Palm Springs.
· Jomier J, Aylward S, Rigid and Deformable Vasculature-to-Image Registration: A Hierarchical Approach. MICCAI 2004 (Medical Image Computing and Computer-Assisted Intervention Conference), October 2004, St Malo, France.
· Jomier J, Week S, Aylward S, Vascular Image Registration for Intra-Operative 3D Ultrasound Annotation, CARS 2004 (18th International Computer Assisted Radiology & Surgery Conference), June 2004, Chicago.
· Jomier J, Rault E, Aylward S, Automatic Quantification of Pupil Dilation Under Stress, ISBI 2004 (IEEE International Symposium on Biomedical Imaging: From Nano to Macro), April 2004, Washington DC.
· Jomier J, Wallace D, Aylward S, Quantification of Retinopathy of Prematurity via Vessel Segmentation. MICCAI 2003 (Medical Image Computing and Computer-Assisted Intervention Conference), November 2003, Montreal.
· Dini C, Jomier J, Cool D, Aylward S, Vascular Atlas Formation Using a Vessel-to-Image Affine Registration Method. MICCAI 2003, November 2003, Montreal.
· Aylward S, Jomier J, Weeks S, Bullitt E, Registration of Vascular Images, International Journal of Computer Vision, November 2003.
· Aylward S, Jomier J, Guyon JP, Weeks S, Intra-Operative 3D Ultrasound Augmentation. ISBI 2002, July 2002, Washington DC.
· Wallace D, Jomier J, Aylward S, Landers M, Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity, 28th Annual Meeting of the American Association for Pediatric Ophthalmology and Strabismus, March 2002, Seattle.
· Wallace DK, Jomier J, Aylward S, Landers MB. Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity. Journal of the American Association for Pediatric Ophthalmology and Strabismus, March 2002.
· Wallace DK, Jomier J, Aylward S, Landers MB. Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity. The Retina Congress, September 2002, San Francisco.

Book

Jomier J., “Chapter 5: Spatial Objects” ITK Software Guide, Kitware Publications, 2003 pp.91-112

Reviewer

Journals: IEEE Transactions on Medical Imaging, Medical Image Analysis.
Conferences: Medical Image Computing and Computer-Aided Intervention, International Symposium on Biomedical Imaging, Information Processing in Medical Imaging.

Conference Committee Chair/Member

Conference co-chair, 19th Annual Radiology Research Symposium, UNC-Chapel Hill, 2004 

Software

· Human Face Visualization (H.F.V): 3D object reconstruction from two images. www.hvf.fr.st
· Stereo Face: 3D face reconstruction from two web cameras
· Code And Chat Utility System (CACTUS): Chat system with code sharing (in development)
· IPTK: Graphical Development Tool for Fast Image Processing Development (in development)
· PhP Project Manager: PhP-based software for project management
· Wireless Sharing Tool: PocketPC and Mobile devices software for sharing notes and controlling MS PowerPoint presentations remotely.
· Wireless Tracking System: Tool for video retransmission on PocketPC devices with camera tracking system integration

Skills

Languages: French, English, Spanish
Computing: C++, C, Visual C++ Embedded, MPI, MFC, Pascal, VB, Delphi
Networking: PhP, ASP, Perl, Html, MySQL
Image Processing: ITK, VTK, OpenGL, MatLab, Qt, FLTK, CMake.

Personal

Nationality: French
Interests: Piano, astronomy, volley-ball, Arts, reading, movies, scuba diving, traveling.