Julien Jomier

Jan 07

First picture of the moon. Taken with Celestron NexStar 8 SE with Canon 20D in Chapel Hill, NC.

The Insight Toolkit -

ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis.  Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional data.

Jan 01

CDash: The Open-Source Software Process Dashboard -

CDash is an open source, web-based software testing server. CDash aggregates, analyzes and displays the results of software testing processes submitted from clients located around the world. Developers depend on CDash to convey the state of a software system, and to continually improve its quality.

Jan 07

Publications

Books

The ITK Software Guide 2.4: Purchase a copy
Jomier J., “Chapter 5: Spatial Objects” ITK Software Guide, Kitware Publications, 2003 pp.91-112

Publications

• Jomier J., Bailly A., Le Gall M., Avila R., An Open-Source Digital Archiving System for Medical and Scientific Research, Open Repositories 2010, Jul-2010
• Krishnan K., Ibanez L., Turner W., Jomier J., Avila R., An open-source toolkit for the volumetric measurement of CT lung lesions, Optics Express, Jul-2010
• Jomier J., Aylward S.R., Marion C., Lee J., Styner M., A digital archiving system and distributed server-side processing of large datasets, Proc. SPIE, Vol. 7264, 726413 (2009); DOI:10.1117/12.812227
• Jomier J., Ibanez L., Enquobahrie A., Pace D., Cleary K., An open-source framework for testing tracking devices using Lego Mindstorms, SPIE Medical Imaging, Feb-2009
• Cleary K., Enquobahrie A., Yaniv Z., Ibanez L., Aylward S., Zhang H., Gobbi D., Jomier J., Kim H., Cheng P., Blake B., Gary K., IGSTK: The Book, Signature Book Printing, Gaithersburg, Maryland, 2007
• Enquobahrie A., Cheng P., Gary K., Ibanez L., Gobbi D., Lindseth F., Yaniv Z., Aylward S., Jomier J., Cleary K., The Image-Guided Surgery Toolkit IGSTK: An Open Source C++ Software Toolkit, Springer-Verlag, 2007
• Peyre J, Smith J. K, Jomier, J, Castellano F, Hollingshead M, Aylward S, Castill M, “Systemic Lupus Erythematosus CNS Vasculitis: circulatory pathology demonstrated with perfusion MRI”, ASNR, April 2006, San Diego CA.
• Koenih M, Spindler W, Rexilius J, Jomier J, Link F, Peitgen HO, “Embedding VTK and ITK into a visual programming and rapid prototyping platform “, SPIE Medical Imaging, February 2006, San Diego CA
• Jomier J, LeDigarcher V, Aylward S, “Comparison of Vessel Segmentations Using STAPLE”, MICCAI 2005, October 2005, Palm Springs CA
• Jomier J, LeDigarcher V, Aylward S, “Automatic Vascular Tree Formation Using the Mahalanobis Distance”, MICCAI 2005, October 2005, Palm Springs CA
• Aylward S, Jomier J, Vivert C, LeDigarcher V, Bullit L, “Spatial Graphs for Intra-cranial Vascular Network Characterization, Generation, and Discrimination”, MICCAI 2005, October 2005, Palm Springs CA
• Blake, M.B., Cleary, K., Kim, H.S., Ranjan, S.R., Gary, K., Jomier, J, Aylward, S., and Ibanez, L., “Component-Based Design and Development for Robust Medical Applications”, High Confidence Medical Device Software and Systems (HCMDSS) Workshop, Philadelphia, PA, June 2005
• Rexilius J. , Jomier J., Spindler W., Link F.,Koenig M., and Peitgen H-O., “Combining a Visual Programming and Rapid Prototyping Platform with ITK” Workshop Bildverarbeitung für die Medizin (BVM), Springer Verlag,Heidelberg, Germany, pp. 460-464, 2005
• Jomier J, Aylward S, “Rigid and Deformable Vasculature-to-Image Registration: A Hierarchical Approach”, MICCAI 2004, September 2004, St Malo (France)
• Jomier J, Week S, Aylward S, “Vascular Image Registration for Intra-Operative 3D Ultrasound Annotation”, CARS 2004, June 2004, Chicago
• Jomier J, Rault E, Aylward S, “Automatic Quantification of Pupil Dilation Under Stress”, ISBI 2004, April 2004, Washington DC
• Jomier J, Wallace D, Aylward S, “Quantification of Retinopathy of Prematurity via Vessel Segmentation”, MICCAI 2003, November 2003 
• Dini C, Jomier J, Cool D, Aylward S, “Vascular Atlas Formation Using a Vessel-to-Image Affine Registration Method”, MICCAI 2003, November 2003
• Aylward S, Jomier J, Weeks S, Bullitt E, “Registration of Vascular Images,” Accepted, International Journal of Computer Vision, Submitted, March 2003, pages 15
• Aylward S, Jomier J, Guyon JP, Weeks S, “Intra-Operative 3D Ultrasound Augmentation.” IEEE International Symposium on Biomedical Imaging, July, 2002, Pages 4
• Wallace D, Jomier J, Aylward S, Landers M, “Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity”, 28th Annual Meeting of the American Association for Pediatric Ophthalmology and Strabismus, Seattle, Washington, March, 2002
• Wallace DK, Jomier J, Aylward S, Landers MB. Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity. Journal of the American Association for Pediatric Ophthalmology and Strabismus 2003;7:126-130.
• Wallace DK, Jomier J, Aylward S, Landers MB. Computer Automated Quantification of Plus Disease in Retinopathy of Prematurity. The Retina Congress, San Francisco, California, September, 2002 

Workshops/Symposiums

• Jomier J,”Pre- to Post- Surgery Registration Using Vessels”, presented at the 18th Annual Radiology Research Symposium, University of North Carolina at Chapel Hill, April 2003
• Chillet D, Jomier J, Aylward S,”Vascular Atlas Formation via a vessel-to-image affine registration method”,18th Annual Radiology Research Symposium, UNC, April 2003
• Bland A, Jomier J, Aylward S,”Rigid Registration of 3D vessels with 2D Digital Image”,18th Annual Radiology Research Symposium, UNC, April 2003
• Aylward S, Weeks S, Fair J, Jomier J, Foskey M,”3D Living Donor Liver Transplant Planning”,18th Annual Radiology Research Symposium, UNC, April 2003
• Aylward S, Weeks S, Bullitt E, Jomier J, Guyon JP,”3D Ultrasound Annotation for Image-Guided Liver Lesion Radio-Frequency Ablation”,18th Annual Radiology Research Symposium, UNC,2003
• Jomier J,”A New Tool for Estimating Retinopathy of Prematurity”, presented at the 17th Annual Radiology Research Symposium, University of North Carolina at Chapel Hill, March 2002
• J. P. Guyon, J. Jomier, S. Aylward,”Augmenting intra-operative 3D Ultrasound using pre-operative CT and MR data”, 17th Annual Radiology Research Symposium, UNCl, March 2002
• S. Aylward, L. Ibanez, J. Kim, J. Jomier, J.P. Guyon,”The National Library of Medicine’s Insight Toolkit”,17th Annual Radiology Research Symposium, UNC, March 2002